CHAPTER 10 · 10 STUDY NOTES · RAYMON SU

DNA and gene expression
One idea at a time.

Review DNA replication, transcription, translation, RNA processing, and mutations.

Part of the free Knowledge Mountain biology library. Read an explanation, try a question, and use a memory cue to check what you can recall.

Two complementary ladders run opposite waysMake the complementary DNAEach new double helix keeps one old strandUnzip, extend, sealDNA writes a message, ribosomes read itMake RNA from the templateEdit the message before exportA codon is not an anticodonA changed letter may or may not change the proteinWhy is this deletion risky?
DNA structure · FIELD NOTE

Two complementary ladders run opposite ways

DNA has a sugar-phosphate backbone and paired bases: A with T, C with G. The two strands run in opposite directions, called antiparallel.

Why it works

Hydrogen bonds connect paired bases between strands. Covalent bonds hold each strand’s backbone together. A sequence on one strand determines the complementary sequence.

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Base pairing · RECALL QUESTION

Make the complementary DNA

Try it before you look

A DNA strand is written 5′-ATGCC-3′. Write its paired strand directly beneath it with correct ends.

Reveal answer

3′-TACGG-5′.

Why it works

Apply A–T and C–G base pairing while keeping the strands antiparallel. If asked to rewrite the complement in the 5′ to 3′ direction, it would be 5′-GGCAT-3′.

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DNA replication · FIELD NOTE

Each new double helix keeps one old strand

DNA replication is semiconservative: each daughter DNA molecule contains one original strand and one newly synthesized strand. DNA polymerase adds complementary nucleotides to the growing strand.

Why it works

New DNA grows 5′ to 3′. Because the templates run opposite ways, one new strand can be made continuously and the other is assembled from fragments.

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Replication enzymes · RECALL QUESTION

Unzip, extend, seal

Try it before you look

Match these jobs to helicase, DNA polymerase, and ligase: separate strands; add DNA nucleotides; join DNA fragments.

Reveal answer

Helicase separates strands; DNA polymerase adds nucleotides; ligase joins fragments.

Why it works

Replication needs coordinated steps. Separating the templates does not copy them, and producing short fragments does not by itself create one continuous backbone.

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Gene expression · FIELD NOTE

DNA writes a message, ribosomes read it

Transcription uses a DNA template to make RNA. Translation uses mRNA codons to build a polypeptide. In eukaryotes, transcription occurs in the nucleus and translation occurs on ribosomes in the cytoplasm.

Why it works

RNA polymerase makes RNA. Ribosomes, tRNAs, and other components perform translation. The DNA sequence is not directly read by a ribosome.

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Transcription · RECALL QUESTION

Make RNA from the template

Try it before you look

A DNA template segment is 3′-TAC GGA-5′. What mRNA segment is made?

Reveal answer

5′-AUG CCU-3′.

Why it works

RNA is complementary to the template and uses U instead of T. The first triplet here, AUG, is commonly the start codon and codes for methionine.

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RNA processing · FIELD NOTE

Edit the message before export

A eukaryotic pre-mRNA usually receives a 5′ cap and a poly-A tail. RNA splicing removes introns and joins exons. The mature mRNA can then leave through a nuclear pore.

Why it works

Alternative splicing can combine exons in different ways, allowing one gene to contribute to multiple protein products. Exons are retained in mature RNA, though not every retained base is translated.

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Translation · RECALL QUESTION

A codon is not an anticodon

Try it before you look

Where is a codon found, and what matches it during translation?

Reveal answer

A codon is a three-nucleotide sequence in mRNA. A complementary tRNA anticodon matches it.

Why it works

The tRNA carries an amino acid, and the ribosome helps link amino acids into a growing chain. Stop codons are recognized by release factors rather than ordinary amino-acid-carrying tRNAs.

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Mutations · FIELD NOTE

A changed letter may or may not change the protein

A base substitution changes one nucleotide pair. It may leave the amino acid unchanged, replace an amino acid, or create a stop codon. Insertions or deletions can shift the reading frame if their size is not a multiple of three.

Why it works

The effect depends on location and context. A mutation in a noncoding region can still matter if it changes regulation or RNA processing.

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Mutation reasoning · RECALL QUESTION

Why is this deletion risky?

Try it before you look

One nucleotide is deleted near the beginning of a protein-coding sequence. Why can it affect many later amino acids?

Reveal answer

It can cause a frameshift, changing how later bases are grouped into codons.

Why it works

Ribosomes read consecutive groups of three. Removing one base shifts those groups and can also produce an early stop. Deleting three bases usually preserves the frame, though it can still damage function.

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